PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130126001
Common NameGSBRNA2T00130126001, LOC106432847
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 387aa    MW: 43405.8 Da    PI: 8.6532
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130126001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-32210263255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSBRNA2T00130126001 210 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 263
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15207263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28208263IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-24210263IPR006447Myb domain, plants
PfamPF002495.4E-7211262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSMEGVFLEK PTSNTTTTLP DLSLNISLPD THHNESSKEL SRRSSQTDNN RSSNFELSLS  60
HHNNPSSNPS TRILHCPDRR NLYNNHILSG GSLHQRVDES EINNIHRPIR GIPVYHNRSF  120
PFHQQASPSS LPSLGGDFSI LNSSSGYNNA YRSFQSSPRL KGVPMHHHNH YGAVGSSDSS  180
YPHHHNHHHH GMVRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV  240
LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINANERA QSDDTSPHHQ  300
EIDFPSTQPR WSNSSGETWP LSNNCASDID TVIRTSSTSM ISHHQKTSLL QNQDQRSNDQ  360
GKRCGDLSCN NPSLEFTLGR PDWHEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130126001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0301920.0AY030192.1 Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete cds.
GenBankAY0486880.0AY048688.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI1 (KAN1) mRNA, complete cds.
GenBankBT0264360.0BT026436.1 Arabidopsis thaliana At5g16560 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013729150.10.0PREDICTED: transcription repressor KAN1-like
RefseqXP_013729156.10.0PREDICTED: transcription repressor KAN1-like
SwissprotQ93WJ90.0KAN1_ARATH; Transcription repressor KAN1
TrEMBLA0A078CRM10.0A0A078CRM1_BRANA; BnaA03g06110D protein
STRINGAT5G16560.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66062645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.10.0G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]